{ "_id": "6ac8df7cde46216d5edd8b3e", "Package": "tsiR", "Type": "Package", "Title": "An Implementation of the TSIR Model", "Version": "0.4.3", "Date": "2021-01-05", "Authors@R": "c(person(\"Alexander D.\",\"Becker\",role=c(\"aut\",\"cre\"),email=\"adbecker@princeton.edu\"),person(\"Sinead E.\",\"Morris\",role=c(\"ctb\")),person(\"Ottar N.\",\"Bjornstad\",role=c(\"ctb\")))", "Description": "An implementation of the time-series\nSusceptible-Infected-Recovered (TSIR) model using a number of\ndifferent fitting options for infectious disease time series\ndata. The manuscript based on this package can be found here\n. The method implemented here\nis described by Finkenstadt and Grenfell (2000)\n.", "License": "GPL-3", "LazyData": "true", "Contact": "adbecker at princeton dot edu", "RoxygenNote": "7.1.1", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-09 12:32:09 UTC", "User": "root" }, "Author": "Alexander D. Becker [aut, cre], Sinead E. Morris [ctb], Ottar\nN. Bjornstad [ctb]", "Maintainer": "Alexander D. Becker ", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://adbecker.r-universe.dev", "Date/Publication": "2021-01-20 17:20:02 UTC", "RemoteUrl": "https://github.com/cran/tsiR", "RemoteRef": "HEAD", "RemoteSha": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "_user": "adbecker", "_type": "src", "_file": "tsiR_0.4.3.tar.gz", "_fileid": "https://r2.ropensci.org/f4361984812997955f73d2198ba95bbc5fe9ad5611669bef749da427c4d5d62c", "_filesize": 329981, "_sha256": "f4361984812997955f73d2198ba95bbc5fe9ad5611669bef749da427c4d5d62c", "_expires": "2027-01-17T12:35:06.000Z", "_created": "2026-10-09T12:32:09.000Z", "_published": "2026-10-09T12:35:08.347Z", "_buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 113820461909, "time": 125, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11616137195" }, { "job": 113820462051, "time": 128, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11615599323" }, { "job": 113820462072, "time": 117, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11615878758" }, { "job": 113820462157, "time": 130, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11616195904" }, { "job": 113819437901, "time": 160, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11616136781" }, { "job": 113820461910, "time": 95, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11616565046" }, { "job": 113820462213, "time": 68, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11616132025" }, { "job": 113820461950, "time": 86, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11616380121" }, { "job": 113820461984, "time": 86, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11616890430" } ], "_upstream": "https://github.com/cran/tsiR", "_commit": { "id": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "author": "Alexander D. Becker ", "committer": "cran-robot ", "message": "version 0.4.3\n", "time": 1611163202 }, "_maintainer": { "name": "Alexander D. Becker", "email": "adbecker@princeton.edu", "login": "adbecker", "description": "", "uuid": 8204251 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "ggplot2", "role": "Imports" }, { "package": "kernlab", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "grid", "role": "Imports" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "adbecker", "count": 7, "uuid": 8204251 } ], "_userbio": { "uuid": 8204251, "type": "user", "name": "Alex Becker", "followers": 7 }, "_downloads": { "count": 296, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/tsiR" }, "_mentions": 4, "_searchresults": 28, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md", "extra/tsiR.html" ], "_realowner": "adbecker", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2017-02-17" }, { "version": "0.2.0", "date": "2017-05-23" }, { "version": "0.3.0", "date": "2017-08-14" }, { "version": "0.4.0", "date": "2018-12-20" }, { "version": "0.4.1", "date": "2019-01-29" }, { "version": "0.4.2", "date": "2019-07-09" }, { "version": "0.4.3", "date": "2021-01-20" } ], "_exports": [ "corr", "derivative", "epitimes", "estpars", "jagsfilter", "logcorr", "maxthreshold", "mcmcestpars", "mcmctsir", "plotbeta", "plotbreaks", "plotcases", "plotcomp", "plotdata", "plotforward", "plotLLE", "plotregression", "plotres", "plotrho", "plotsbar", "predicttsir", "residual.births", "residual.cases", "runtsir", "simulatetsir", "TSIR_LE", "TSIR_LLE", "tsiRdata", "vplayout" ], "_datasets": [ { "name": "twentymeas", "title": "Measles incidence data from 20 cities", "object": "twentymeas", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "corr", "title": "corr", "topics": [ "corr" ] }, { "page": "derivative", "title": "derivative", "topics": [ "derivative" ] }, { "page": "epitimes", "title": "epitimes", "topics": [ "epitimes" ] }, { "page": "estpars", "title": "estpars", "topics": [ "estpars" ] }, { "page": "jagsfilter", "title": "jagsfilter", "topics": [ "jagsfilter" ] }, { "page": "logcorr", "title": "logcorr", "topics": [ "logcorr" ] }, { "page": "maxthreshold", "title": "maxthreshold", "topics": [ "maxthreshold" ] }, { "page": "mcmcestpars", "title": "mcmcestpars", "topics": [ "mcmcestpars" ] }, { "page": "mcmctsir", "title": "mcmctsir", "topics": [ "mcmctsir" ] }, { "page": "plotbeta", "title": "plotbeta", "topics": [ "plotbeta" ] }, { "page": "plotbreaks", "title": "plotbreaks", "topics": [ "plotbreaks" ] }, { "page": "plotcases", "title": "plotcases", "topics": [ "plotcases" ] }, { "page": "plotcomp", "title": "plotcomp", "topics": [ "plotcomp" ] }, { "page": "plotdata", "title": "plotdata", "topics": [ "plotdata" ] }, { "page": "plotforward", "title": "plotforward", "topics": [ "plotforward" ] }, { "page": "plotLLE", "title": "plotLLE", "topics": [ "plotLLE" ] }, { "page": "plotregression", "title": "plotregression", "topics": [ "plotregression" ] }, { "page": "plotres", "title": "plotres", "topics": [ "plotres" ] }, { "page": "plotrho", "title": "plotrho", "topics": [ "plotrho" ] }, { "page": "plotsbar", "title": "plotsbar", "topics": [ "plotsbar" ] }, { "page": "predicttsir", "title": "predicttsir", "topics": [ "predicttsir" ] }, { "page": "residual.births", "title": "residuals.births", "topics": [ "residual.births" ] }, { "page": "residual.cases", "title": "residuals.cases", "topics": [ "residual.cases" ] }, { "page": "runtsir", "title": "runtsir", "topics": [ "runtsir" ] }, { "page": "simulatetsir", "title": "simulatetsir", "topics": [ "simulatetsir" ] }, { "page": "TSIR_LE", "title": "TSIR_LE", "topics": [ "TSIR_LE" ] }, { "page": "TSIR_LLE", "title": "TSIR_LLE", "topics": [ "TSIR_LLE" ] }, { "page": "tsiRdata", "title": "tsiRdata", "topics": [ "tsiRdata" ] }, { "page": "twentymeas", "title": "Measles incidence data from 20 cities", "topics": [ "twentymeas" ] }, { "page": "vplayout", "title": "vplayout", "topics": [ "vplayout" ] } ], "_readme": "https://github.com/cran/tsiR/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "kernlab", "labeling", "lifecycle", "magrittr", "plyr", "R6", "RColorBrewer", "Rcpp", "reshape2", "rlang", "S7", "scales", "stringi", "stringr", "vctrs", "viridisLite", "withr" ], "_score": 2.7481880270062007, "_indexed": true, "_nocasepkg": "tsir", "_universes": [ "adbecker" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4.3", "date": "2026-10-09T12:34:05.000Z", "distro": "resolute", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/ec3179bb70196d0f01a9e0d689b132ec0af6de64d8a20dafae231db0e5d16f19", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.6.1", "os": "linux", "version": "0.4.3", "date": "2026-10-09T12:34:06.000Z", "distro": "resolute", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/75c2dc917cf28ce848214ed9a6d63cb742aa8bbaa4e30036ae71de7d5a983586", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.5.3", "os": "mac", "version": "0.4.3", "date": "2026-10-09T12:34:05.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/4bc7ee7f69766125598d58a943420d16ccdfb8ae57bf2cd0e80816cc20d378c0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.6.1", "os": "mac", "version": "0.4.3", "date": "2026-10-09T12:34:16.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/79252bd6646b3ff9e237c2c6b4a95cef566d08bc28f443cac893a16eaa4d268a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.6.0", "os": "wasm", "version": "0.4.3", "date": "2026-10-09T12:34:06.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/4fa96d1a32ec811cb48a00536a2a3da6f168b86828d15c0c0dca38bd9f515dbf", "status": "success", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.7.0", "os": "win", "version": "0.4.3", "date": "2026-10-09T12:33:13.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/b1c8b7bce0bbff422f784821d51c0dd7facf4b51cbff79da63bf45fbdb930b55", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.5.3", "os": "win", "version": "0.4.3", "date": "2026-10-09T12:33:24.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/238b9cc255539b0a48b32937a651e7fc5444971c8f2e8d0452c5aeb5c7d95ec6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" }, { "r": "4.6.1", "os": "win", "version": "0.4.3", "date": "2026-10-09T12:33:19.000Z", "commit": "d9e81b24ec15fd9c96d8c3fd1375143c70c08312", "fileid": "https://r2.ropensci.org/676267b47e8d950897cd98dc6154ea72e4bfd2c769f56a5b7a2861f2715dacbd", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/adbecker/actions/runs/37930361398" } ] }