Package: tsiR 0.4.3
tsiR: An Implementation of the TSIR Model
An implementation of the time-series Susceptible-Infected-Recovered (TSIR) model using a number of different fitting options for infectious disease time series data. The manuscript based on this package can be found here <doi:10.1371/journal.pone.0185528>. The method implemented here is described by Finkenstadt and Grenfell (2000) <doi:10.1111/1467-9876.00187>.
Authors:
tsiR_0.4.3.tar.gz
tsiR_0.4.3.zip(r-4.5)tsiR_0.4.3.zip(r-4.4)tsiR_0.4.3.zip(r-4.3)
tsiR_0.4.3.tgz(r-4.4-any)tsiR_0.4.3.tgz(r-4.3-any)
tsiR_0.4.3.tar.gz(r-4.5-noble)tsiR_0.4.3.tar.gz(r-4.4-noble)
tsiR_0.4.3.tgz(r-4.4-emscripten)tsiR_0.4.3.tgz(r-4.3-emscripten)
tsiR.pdf |tsiR.html✨
tsiR/json (API)
| # Install 'tsiR' in R: |
| install.packages('tsiR', repos = c('https://adbecker.r-universe.dev', 'https://cloud.r-project.org')) |
- twentymeas - Measles incidence data from 20 cities
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:d9e81b24ec. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | OK | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | OK | Oct 31 2024 |
Exports:corrderivativeepitimesestparsjagsfilterlogcorrmaxthresholdmcmcestparsmcmctsirplotbetaplotbreaksplotcasesplotcompplotdataplotforwardplotLLEplotregressionplotresplotrhoplotsbarpredicttsirresidual.birthsresidual.casesruntsirsimulatetsirTSIR_LETSIR_LLEtsiRdatavplayout
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandkernlablabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| corr | corr |
| derivative | derivative |
| epitimes | epitimes |
| estpars | estpars |
| jagsfilter | jagsfilter |
| logcorr | logcorr |
| maxthreshold | maxthreshold |
| mcmcestpars | mcmcestpars |
| mcmctsir | mcmctsir |
| plotbeta | plotbeta |
| plotbreaks | plotbreaks |
| plotcases | plotcases |
| plotcomp | plotcomp |
| plotdata | plotdata |
| plotforward | plotforward |
| plotLLE | plotLLE |
| plotregression | plotregression |
| plotres | plotres |
| plotrho | plotrho |
| plotsbar | plotsbar |
| predicttsir | predicttsir |
| residuals.births | residual.births |
| residuals.cases | residual.cases |
| runtsir | runtsir |
| simulatetsir | simulatetsir |
| TSIR_LE | TSIR_LE |
| TSIR_LLE | TSIR_LLE |
| tsiRdata | tsiRdata |
| Measles incidence data from 20 cities | twentymeas |
| vplayout | vplayout |
